NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10077296

Scaffold Ga0222716_10077296


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10077296 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2294
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005590Metagenome / Metatranscriptome395N
F009460Metagenome / Metatranscriptome317N
F051865Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_100772964F005590GGAGMNEQMTLLDRWKEMATIENARMHRRMIGRDDMHPYSHKPWAIEALRKEIERCLSRHGELSVGDLCSMIEQDVTHIDLGLKTLRERRRIVKTSYIHGQQLYRVSTKDERRL
Ga0222716_100772965F009460AGGAGMAKWDLSKIEDCSTVGDYIDEDDTRPDQPTPLMIVRSINRKADIMRMDAGRGPERRTMKQRAEEIMSLCSMLEKRL
Ga0222716_100772966F051865GGAGGMTKTTWVALIVFSSPYECADFIEKYKANLYGPVQCVIQYEETNTVRPKRKPIEENNDG
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