NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10083460

Scaffold Ga0222716_10083460


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10083460 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2189
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → unclassified Idiomarinaceae → Idiomarinaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038601Metagenome / Metatranscriptome165Y
F056571Metagenome137N
F077247Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0222716_100834601F056571N/AVNFRVDTIYGLLTEGQSRGQIVQFSANQWNCSARQADEYIQRARIRLEQDADMARPAWLAEALGRLRTYEQSAYKRGQTQVALNAVQLQAKLIGFDL
Ga0222716_100834603F038601GAGMKLYSPDAKGKYVWQVADSKTRQVSFSVTTTRTAPPDACYGHPIGKYDDQGVFMTFCPNVGADDPKSPLAARYVLHPLAPAERERADRERMWREI
Ga0222716_100834605F077247GGAGGMGRFKLTFNPDDARRVLRQGIEKGRWTLQDLDNPPPGWVLSELDAKRIPGFTPRPYRNLLRDEPAPAERVQITDPRDFAVAQAPANHVQRGSAPL
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