NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10119636

Scaffold Ga0222716_10119636


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10119636 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F004368Metagenome / Metatranscriptome441Y
F006271Metagenome / Metatranscriptome377Y
F026745Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0222716_101196361F006271GGAMLIYGNTPRDIMNMMWRRRYKVMSVIAVIVIALMLAGCTVGNRKVTPPLKALDAFWDTLGSGKNKTKQDSTGVE
Ga0222716_101196363F026745AGGAGMMTVAYGFGMLALGFAVILIAGVIIFKIINHEKKEDRYGK
Ga0222716_101196364F004368GGAGGMTGTRLTDIVFDRHEDFLYEDSRAMKLTPYVMAERLTQWEFDSIMSDTREGDYGTLTTMLEQGFKGFHNMEPSELIEEYKQAEERWYRMYEEGSLMTQPCEQDPIHEQEMA
Ga0222716_101196366F000379N/AIDYSNKTKIMIGYIDASSNVVAIETGWNISNTAMAQILLNKYPTKAEAILAVDSPALVPTFKKEDYCYVDGFGDVIESNLSWNKEDMRPDVGHLFLFMKGTWQYSDNGIDWEPATELLKEVA
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