NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222716_10146623

Scaffold Ga0222716_10146623


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10146623 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1545
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016269Metagenome / Metatranscriptome248Y
F029600Metagenome188Y
F032639Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0222716_101466232F016269N/AMNVNDFIFLCEEYNIDPVIASEDEGVRKILKTPTSDVNQQLMLSGYLHKNF
Ga0222716_101466234F029600N/AMKYWNGEGQYQDLFDKYWKEIVPDKGEADTDAGNALRAIARINHDVFNNGAGNIVNESMEVDDDGEWYTLYEVERWWEKFFSDIYDYSRLDTDRLKRKIIESVQFDRDGGLSDMLDDYIDHIILKVDNQLVAK
Ga0222716_101466235F032639N/ALKWGMDDVRNVLERYGIASTTPKEDVERILIRSFQNNYRLMEAIDKAINETVADMIYEGQLNTEEL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.