NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10015732

Scaffold Ga0222715_10015732


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10015732 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5815
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047991Metagenome149N
F068249Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0222715_100157322F047991GAGMQTHNLVATNKSFSAVHTQDTLKQFNTRHKFAKQQKLSEHVTCTSIYTDDADICFMFNVVHKNKTYTVDIYANYKNDYVSGNVYNCKYNTAIKILKQHFNLRVCYLQKYSDDMYFNAK
Ga0222715_100157324F068249AGGAGGMRYTGTNTTLLAFEKSNYDFNVKHNCGGDENACYNLTDKQKETIFKIVDKYKFIEGNYSSTMIQGVGHAYCDSGITSDSWATEDVEILSKYLRDEIADTDTNIFYETEIVQEIGDSIINLHTDGKRTHMLHNLFIAEMETALNTHDIETWAEYAWDLESYMYENK
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