NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10019341

Scaffold Ga0222715_10019341


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10019341 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5134
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002907Metagenome / Metatranscriptome521Y
F030378Metagenome / Metatranscriptome185Y
F034111Metagenome / Metatranscriptome175N
F035678Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0222715_1001934113F030378AGGAMTSEYLSSDFSYKKYSLEHLENWLHDAIDCEDLTPQDIYETIVKCVDENVEYHKKYLTKNIEFLSLLKGNRPVNLSESVEEATKKDWVDFWEETYRPEQYIEQEMDAMCDTAKDKEKCREYNMREAEYYNKRAEIDYLYEEIKKAGGYDWTPSV
Ga0222715_100193412F035678GGAGMSEEKKYSRYRIDQLAKELEGNWHRKVITNGRNEYKQIVIEYDHKKC
Ga0222715_100193413F034111N/AMLELTLASLLNTMSADFCALMEKDGDVVKSTFLAYSMANKQYGPDNVIKIIDEATPLQIKSLAVSSVITKCPDKL
Ga0222715_100193419F002907GGAGGVKQNPYWFFQKWGINEPTPLEVLEQKVQELEDRVTLLEQENIGQTNALYEAMNSIEARIDILTADRLNNFNLGGK

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