NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10032127

Scaffold Ga0222715_10032127


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10032127 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3773
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020889Metagenome / Metatranscriptome221Y
F022640Metagenome / Metatranscriptome213Y
F105081Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0222715_1003212710F020889GAGVTVFWLSTKPAEPSQIVYLSHMENNTTQTSLFSQGWKAEVYFGSELNAHHLNTRSVYRFKENGDIAITHSAKYVDDGTVDVFTVSYRKEINPRHSVTETVDTFANWLDAYYCGVQCVNNLNMELEGAAM
Ga0222715_100321276F105081N/AMTLSNDQLSKLTLMYAERVVDNMDIRDLCAFAIDTIVDNMTDYNESELMEELSHYYDEDELQEMVEEVTQTA
Ga0222715_100321278F022640N/AMRIALLIATLAMGLKVGLAAHATVNEYQEQQADRFCQVDPNYCTAK
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