NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10053017

Scaffold Ga0222715_10053017


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10053017 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2788
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010681Metagenome / Metatranscriptome300Y
F023809Metagenome / Metatranscriptome208Y
F070027Metagenome / Metatranscriptome123Y
F095417Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0222715_100530171F023809N/AMYTIKLLAPVLMGLCADNFMNGQGEYCNPRQSKPNVVRYYEPGKSCYKNGIFYEKCENSPEVRY
Ga0222715_1005301710F070027N/AMTSKTNLILALMQIENISNLVRKNNYEAFFTSHLLPIKFELERQLALQNNGRKETV
Ga0222715_100530174F095417GGAGMINFIKSLFAPTEKVLECDDIYSKIIELENRIVKLEEENVETTNVLYELGNSIDAVDVRIDILTAEKWIAKDV
Ga0222715_100530175F010681N/AMKLTPNQQMWANIFSCAVQRSNICFADKDLDRHAREHTTVVLALQKGEEFWRKLL
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