NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10000867

Scaffold Ga0222714_10000867


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10000867 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34378
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (90.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002689Metagenome / Metatranscriptome536Y
F042304Metagenome / Metatranscriptome158Y
F074583Metagenome119Y
F103122Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100008673F103122GGAMMTLEQIRNALSDRMPVKVAEATGLHYNTIREVRDNPEANPTYKVMLALSTYLEGRSNDQQS
Ga0222714_1000086732F002689AGGMGTIDATEARLSTHEEVCAIRYDQIHARLKRIEGIMIKTAGIMLVSMAGTIFAAIWMTK
Ga0222714_1000086740F042304AGGAGVSRLIETYRKCPSPSNRAKLQAYLQKHMMSVCMATEQEIAFLKAHEFKI
Ga0222714_100008676F074583GAGMTPIHDSPNFASWQQETLAKFAAEVYERLVAEQAANEQLRLDLKDAMKLARQQNLKDNAA
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