NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10000886

Scaffold Ga0222714_10000886


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10000886 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34048
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (46.34%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016639Metagenome / Metatranscriptome245Y
F017641Metagenome / Metatranscriptome239Y
F033413Metagenome / Metatranscriptome177Y
F041726Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000088614F016639N/AMLSLLAQGNTGSEIMSILDAIATDNVAGFDYIEGQQIESALGIPTLEEIAF
Ga0222714_1000088625F033413N/AMTAHFANLFAQNTDLTAKFVTDFKRTFKSNTFDKYTRNDGKVYIKHSVDRDTKDDVFSVEAMIYEYKGCWSGSQKSFGSFNNFADAISCARNVQLSEDSISEDEALSLMRN
Ga0222714_1000088629F041726N/AMNNYRLLIEYWVPDEDENLYEEKLIQSRSSCGKIADDYLAQDRTNLIRSVEVFPV
Ga0222714_1000088630F017641GGAMSTTTEMDQVFHYVTNWKEGKVMQMFIQQITPEYQECDHKYVAIALNPVTNKSMVMSNPRSHYDTLQWVRKFCGSFSLLY
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