NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10001585

Scaffold Ga0222714_10001585


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10001585 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25493
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (31.58%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007167Metagenome / Metatranscriptome356N
F008746Metagenome / Metatranscriptome328N
F019819Metagenome / Metatranscriptome227N
F021101Metagenome / Metatranscriptome220N
F042805Metagenome / Metatranscriptome157N
F078652Metagenome / Metatranscriptome116N
F100545Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000158511F078652N/AMAHYKINSSELGNLAGYGAKFCSPREAAEKFWKRNRPGAFNEYVKNHGQPTWHKKDAFVYGNANAKQIMEEARKVNTETTSDIGGILKSVSDDKRATNFTPEQKQFLEEATRTRVFQHHGTRKEDSTLDQWCTQNGKDAHKPTKKFTLQVHPEVTLNGYIDGITTDDELVEIKNRAGGRLFNEVRDYEMAQCQAYLRMLKIDRGFLVECLRQEGREPKLNTIPFTRDDEFWEDTIERVLTNIFDPRFECFRVTETDQSAS
Ga0222714_1000158512F007167N/AMEVKDAVFDFYLSPSSAVYIPKEGVESKKMKDGTIIKVPKYMYHPLTIEIMPRADYKTIQHPKRKKFLFSMRETKPVPADIRKYIENPEPEKLREALVVIQRRIRQMFETPIQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWVTTTMKRLGNPWDLKNKVERDRKKAELFNVISNLLEDKDKIPYVSRMLIDRFR
Ga0222714_1000158513F042805AGGMKVTFPGWFGWFEEETLEDKDKVSIIENCFMEIKDVYAEKLLWPSIYMEEDGYDSEDDLEMIWHYSEAQSYLEEYLEKNGYNRDYYHIMHVEATFHEPGKEPRKLKFYVKEITCEIRHPGGNCPDEMFKWWVCEDKYGDFDEYINDIPDENYRIFLYCLNKAWQDVKALPECITKLIDTQRPKR
Ga0222714_1000158518F100545GAGMESTDRSFTVIDIRKPGQGGKKTSIPSDGGRYVSKTPFSAARKGFSKACREKRIRGQCTFIVTIQETTRGENGKVFSYKLKREKLKEPKEITRGGGVLGGGVPITIEYSISGKAVPVPKG
Ga0222714_1000158526F019819N/AMLFNETTASDFIIEGSDDSKFIFIKGPDVQIPKFRCPFGVSCFETDYGAPKYNLELEIHESERSKMFMDWLTKIEKYIVDYVCSNAMDIFGKEMGREQIQNMFRSNLKENRFRVKIDKDTLSKDADGNINDILCKGAMKGNTCVCVLRLKMVYFMNNNFGLVWNATQTSFGQSKQPPQGPDFGQYQFLD
Ga0222714_100015854F021101AGAAGMWFVPLFIGIHSFFEKKLSPKKTHTLVNLFHMASVFTWNPGFAVSKSYFLADFFLLYKNRQSYPGLWQLLLAHHVVSYAILVTEQESEDVDLALKWAEVSNLSLAVYELYPNTFTKTMRVIIYPWSRCVMLPMVLVESTKTIGVKALALGVPIVGGSFWWSWKIIKDFLRK
Ga0222714_100015857F008746N/AMERLISKLNRPPVRFNKDGFLKSLNKNAKQAIIALKDAPELKKAVIVDVLQRFNKIIKAAKFPDDVSMVRNGFFLYGGQVIHEVFQQTKKLVDPKIRVAMEMTPSSDYDGQLILKFKKDGKLSRAENISKETKLKKFLLKVMEKAAEPYGPLFKVSIATKLPHVIDITLADAKTGFDYAEIHVVNGYMKERIGNEYTERGADRLAQTKCCVETLKSLGLPVLNLKSLLYDQLFALDSMLTGNSHRKAVRPDKCQQRFIRMTFIYDLMKKTKKSIPKNVSLLVNEIVMRMDQPKYKNYFKQCSVKIH

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