NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10003127

Scaffold Ga0222714_10003127


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10003127 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17069
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (22.86%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F019119Metagenome / Metatranscriptome231N
F032245Metagenome / Metatranscriptome180Y
F037129Metagenome / Metatranscriptome168Y
F044374Metagenome / Metatranscriptome154Y
F047578Metagenome / Metatranscriptome149Y
F060730Metagenome / Metatranscriptome132Y
F065559Metagenome / Metatranscriptome127Y
F067648Metagenome / Metatranscriptome125N
F077051Metagenome / Metatranscriptome117Y
F077197Metagenome / Metatranscriptome117N
F078606Metagenome / Metatranscriptome116Y
F082372Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000312710F082372N/AMSELETGWVSALIKCDLCGYESLSVHHESCDKLECANCGRMSHYEVLEYYTEES
Ga0222714_1000312714F037129N/AMNVNKKDYKVVEVQDGYVTKYAVKKRIFWLFWKTIKNNAGFDMQYDTKRAAQSYINFLK
Ga0222714_1000312716F019119N/AMLELSAQIAKEHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDTEIKNMIAMLESSDEENLHMVTLSIKSFRDLRVKEHGEYSKVNQVYWKIAKDYPHEILNHEVFMKTMSPANG
Ga0222714_1000312718F077051GAGMTQQQLIDLGFNKVEINDSESQNGYDYFFYTLDIFDNLTLMSVDSDQVQDGNWYVYNMDWPDKNFKLQTVGQVQQFLHSVGHFAS
Ga0222714_1000312719F077197AGAAGGMFLPIEFRDEQGPYIEHLNVTHITRISFVNPRNPDAGSKIHLRTGEVLKTVMPFDVLSQEIDDAWESASTLILSTMLSEKAKLMKQSDLRNEGIAELDPLSEV
Ga0222714_1000312724F032245N/AMREIFIRMSQMGLTPNMLYVLYCMHNNIIPDKSVNTSLEVSKLLSGNYLTESLELSGNSLKFIQEIDGFFKKSKKKTSKDLMGDSFQDNLKLYNDIFPKGKLPSGVPARVNIKGLENAFRWFFENFNYSWETVIKATEKYVDEYSMNRYNYMRNSQYFVRKQNTDKTWDSTLATYCDMIEADDYEEPNYFKENIV
Ga0222714_1000312725F078606GAGMIKTKLFFVALTGSLVSWLLVHTLLVEMNFVQFLAIEFIVGISHYIYNDVKSKLTT
Ga0222714_1000312727F044374N/AMTRKEREKEFFAHHMDKFRKAQVSDPFFAIKTAFFQKGKFGKQVQLFEGELKRGEDIYIEFIEVNRDASGKEIGVEPAFEDRPLFKYKHNPYFAEEYDVKEGTNSNGENYFAYTIPLSELMVVMPDGSEITQNLYEKRKAEAPKEQVSLSVFPDFEDEFIPKLKDVSLDVEESASDILLRIATEFQKLATKIK
Ga0222714_1000312729F003038N/AMALSTTDLGTAGSGLPKTITPGNHVLKINSIELEDFKFIDGAYHLMMHVETQPIEGFEGFMIDKDDESKGRYAGQIGRVKASQYAFADGETKSGVKIQRDRSILIFLRTLAHTMGLDSWFLEQDGQHETIEDFVKAFNKTADFRGKFLEFCVAGKEYEGKSGYTNYDMWLPKAEGKKYAFGSIEAGVVIPFDETKHLKKLEVKEVKSFGDDDDVFLKPKTSSDFSLD
Ga0222714_1000312732F065559N/AMKEIDMIGTLVRLADLGVTGIKVQYEGSGDSGCIENVVYTTEKMDRDEEAAFDEINYIEVWGQDVQHLQELDSGLHSDIENFVEDKLLQDIEDWWNNDGGYGSVCILIPSGKYKIYNDIRITQVESYFHEGSLIQKTL
Ga0222714_1000312734F067648N/AMTRDELKNLINMFQSSDSENHVVAFHAIENSTLDNNELVLLYKFSGQPFAQWKKEIPKTAQKIADVIGDEAIALSSARVLGIITNNKAAKHVIETFLEFFIRDLTSMLGSIGYPMDKVDINVKIRDDGQSTES
Ga0222714_100031275F047578GGALKAICIDSSNKPAKVPIEQWVKEGEVYTIIKVVKMGLQDGKYGVLLKEVQISADCFPYEYYDAERFIPLDIRLHQVEEEKEEVLEEADLELI
Ga0222714_100031277F060730GGAMKEIYMQVMHENNGQIPEEMTIADIMRMKELEIYNWEEYEREQERIRVFRVKQENPREIAKVAQTREYWEKELQAGKTRRIAKSK
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