NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10004377

Scaffold Ga0222714_10004377


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10004377 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13868
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001215Metagenome746Y
F010682Metagenome300Y
F015724Metagenome252Y
F096245Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000437713F001215GAGMASTSTNKQPLMVDRPFIRGAKINSGTTTIGSTSSPEFGNLIQLVRVGDVPSEDGALVEDLFVVSNEGYPNNGGVRSAAFGVYIYAPDQASPSTSSSMMIGKFEVGLSGDTEGLIQRVELPATVAPTPQTGDTNLIRPIEIGKSEALYLEKGYILAIGYIGDGPAAVSGGLSPSGVTIFAQGGFY
Ga0222714_1000437714F015724GGAMAPKRGDDFGWKGHQPKKSSFAFDRIQGASNASKLSRPLPFKQKFRPDFNLKDFSILFDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYFISGTAGVGTALPGACYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYSIKSVTQTSGTIYAVELSSNFGPPISFFTGEVISDRFASDGTEKSTYNNYKVIGVGNGTNPLVPSFAPIFNSIFISLDTDNSWSVINNETLQAPAGLPTVGDYFTTEMRFGCNCPDYLAREDFNLYKYNLKRRYPYTLPQDLKPGTYDAGSDYFADRTTPTRDLPGFTRDFGFLYVKKLINLPSYTDSPVTYSDPNLLYFAPRWCKHIYASFWDLQNRFGKDMFPYVWLDQPSDEPMDDRYREEFQRNLDKQTTFEKRQEHLRWWEKYSPSQNTVPIHMMYADMHPTMVKTLNFDTLASGTSSPMSASGFEMFQFDQYNPFEPIDPATLQKYDGGTYAFGVLTSGSALVFDGGSYLNGVLIPPSSQPSNINGGTY
Ga0222714_100043774F010682AGGMTYNAQTNWKYDRNLYHKIQSGPQRTADNQDVVDTYVVVSSGYVTPSGIKQSWYGVNLEGADFGNIPLAPPNISGYLTTDWKAVPPAVSGYWSDYTNAYPHASGLITIYDGYRQQGLFSVAGRTVQTALGPQPGLRNFGAYTWFGASVPDNQNYSPFQTPSDNTSSTGGITGGPGSYERVKTPMLTNPTNDTSGSRAAWQYNYPVYCKTFVEAVRSDVPGSMSTVTRSSYRGKSTRYVPNYGSVYGVLGEGVRNLVRTFSPGVNSSNQKSV
Ga0222714_100043778F096245N/AMPQPRFAGARLGFLRALPIVGDVIAITSELANPQASPVQRVVNAGLVGGGGLAVSAATGGVDFIPQAVDFINDLQGGPKGPQKLREMQACATAANPDKHLRALATKLGPDKYNNFYGTDFARAVEQCGQSGIPPQYKTEAEKMKYLQYMGSQMGSAF

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