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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021961 Open in IMG/M |
| Scaffold ID | Ga0222714_10006559 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10842 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (43.48%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001018 | Metagenome / Metatranscriptome | 804 | Y |
| F002333 | Metagenome | 569 | Y |
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| F008128 | Metagenome / Metatranscriptome | 338 | Y |
| F056552 | Metagenome | 137 | Y |
| F073444 | Metagenome / Metatranscriptome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222714_1000655910 | F002738 | GGA | MSIDTYGLSTEQYQEFFEGNVRFAAELYLQTCNILAAKNVGSVDFKTVLDIYQEAVYAANDDCRRYQKANNPDALKDNDPYAILTPSREELMEEIQSVNAKVEALTDYLSELVKVTTKGLTGLVD |
| Ga0222714_1000655913 | F002333 | N/A | MTIQTQLELNAAQSCIYTRTNIRRAYQDFDDSEIAGIYVRADDCIVVRRDGTEQTYSRSLIKAAYSSYTHRLKDFFSYLGPNYRGPSVWHHNAYILFKGWYYSHALGHLTSNAKLQSHWADKFIHLSDPAKVTTLLQSDQTDLGHLVAPDGMRLPNRAINLDGELDDNEEQQPVFGEPTCSCGSFQRQFNNLSSFQEEIQGFRPWCIHLTWFNKYRELLCKRTEVRNASPSGTPEKCVAWWYAPPSDHTSDGRFLLLHTKSGAQAPLSHWRTYKPNEVFTQHDAWTLFFNMMEAGYTPFPGTSLPQLKSAVKNQ |
| Ga0222714_1000655917 | F056552 | N/A | MTQPIHDQFTLLYEDENTKVLHEFKGIVADDVIQHLIDFLKGCGYIEDNIFEAMKEMSAAYFDSLSTQKYLMEWDKTKAE |
| Ga0222714_100065595 | F008128 | GAG | MQTVPVPKLTLSFAVDIEVEYNSFGGKTEDEIVEALQDDLDDLLYELSPHVKGVYTSCTSVAFND |
| Ga0222714_100065597 | F073444 | N/A | MNCHQHAVKDFDLQIEMNDLEMEMLKDHDEILPYNEGRVDELEQKKLKLLLGKRFHQNATNAYWYYLAKATK |
| Ga0222714_100065598 | F001018 | N/A | MSQITQTKLNRLNVFELYKHYAALEQSLPLLTPESQDLAKSELETCANLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKNLLGWLRRSLPFDTNKITGKNYQFTLVKKKELTVEVSTDPEFWSSQERELYCIEEEVCTTKRVVLRSMSGEVLSDRTEPSIKTKVLPNLDAIRNAYQNGQQLPSGIKVTQEYGVRSKRIYLEPRVELEASEYPGELLPEDRCTD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |