NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10006698

Scaffold Ga0222714_10006698


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10006698 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10703
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (68.97%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045760Metagenome / Metatranscriptome152N
F046374Metagenome / Metatranscriptome151N
F066790Metagenome / Metatranscriptome126N
F070116Metagenome / Metatranscriptome123N
F078719Metagenome / Metatranscriptome116Y
F099303Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000669811F046374AGGMAKTFGSLKSNKLDMLDKLTMGKFADCRICDIIEDNFEYLIWLNKQGFVNFTTPVMTDLLSRAGFKEAEEHYKNEIEPWENEDVPL
Ga0222714_1000669817F045760GGAGMASSGSKAKQAYAALYKSSTRWATNRKIKLTRVLKQQPNNEQIKDALANIKYRRHTPTTKTVWSHSNIRIAKLFKEFTGRASADLFSSNPKVQSAALAYRPDADKMKVIEGKVNFSLGARAHDSKGNLVWK
Ga0222714_1000669818F078719AGGMEVIELYLLFSLTTGISSCVLFLSPAVALARDTGVQNSFTENTWLSYLIYIIITTITAPFSILPIIIPSFAERFKTGLERAVMESQT
Ga0222714_1000669819F099303AGGMNFIEFTYTKADGTVSKRAAIPLFGPTKFVEAIDVSQMPEDQFADFCREFSALKLTQHEETMAMLEQFDLKHNYRKFNPDNMSNVTTDYV
Ga0222714_1000669820F070116N/AMSKFKTWDSQILADAVKISLQIRTKIEEMCIATRSPPDALPNSLIPTDNLYNLVCAYEAAYNALIENDLLKSGNVKTDKNIH
Ga0222714_100066983F066790GGAMLSKVLQRLQDILKPYTLEDFIEDSDPKDHKDIERLEKIWHNYRVRKQFNSHY
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