NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10010604

Scaffold Ga0222714_10010604


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10010604 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7934
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F003687Metagenome / Metatranscriptome473Y
F051883Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1001060413F001165N/AMTNNTPRIPDSIDLERLSAMQLVAKMKESADKFGIGFVGGFIAPNGEKFMMSNMSDEDTQMLLPEDLK
Ga0222714_1001060415F001120N/AMTERSAFNFDKTIAGVNITERGVKSFTKSFKLGPFQLTLNARESGVRGSISLPGTGLSKRNIKLF
Ga0222714_1001060417F001807GAGGMSVLLIEDTFIDGTNVTVTAVVEDMRLLYRASHFEPEEWAPALCSACFELDDGEQIPTDEDGFCSYLDSLDLDWQLVDTSDWNLD
Ga0222714_100106043F003687AGGAMTPKAVERLLTQDARLLARRDSPVIDQELEAQRQAALEVFFKWQDHACQFQDVIPFCVVLQRKVELNRDLLRWEEQNAV
Ga0222714_100106044F051883N/AMAYADLQTITLLSRIADLKSFETTDGRTCLAVTLYHRISEDAVVTVKFLNSNGLLTAFVNDNLVVGQELTVTGKIQAVRSFYMKDDELVPLKQPEFQLRVMDYAFGSKPQAKVEPKAQTKTTTKKKATPDLELVEV
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