NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10014978

Scaffold Ga0222714_10014978


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10014978 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6323
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011293Metagenome292Y
F013406Metagenome271N
F020893Metagenome221Y
F040084Metagenome162N
F049592Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1001497810F049592GAGMAGLDKPLVLVVWHDAHTLDNDHWYDQTELKDSPCVVHSVGYRISKPNARHLCLAQSITDEQGSDNVLFIPARMVRKVIKLQIPHKRRKTR
Ga0222714_1001497812F040084GGAGGMGLRDEIQPKINKLAELAKWLDDQPNGEEWYELIYDEQYSNQAVASLLTKHGFECNFNVIHRFRMKHVSK
Ga0222714_1001497813F020893N/ARQNQYQPECSNGWTLMPTEIYVALISAVAIVSAAVLPAILIERARKENANDHAYVRRLLTRVERKIDNHLEEHDNGITRRNPAKNK
Ga0222714_100149786F011293GGAGGMSSNIDPGDAAYRAWQLTKGDRMAQYGHPFDDYTRVRRIFGSITNYHHNLTTQEAIMYMVCVKLARLMKSLEEGKMHEDSLVDAIGYLNCLHMADAREMLHDAPKHVLGDMAINYDD
Ga0222714_100149788F013406GAGMNPFTIIAVAACAVSGFGLMLTTEPETDTAGLVSESTVYTAPLRGTVGLDSPADASGSDMSVVTTMPPYTGPGCQEWADTALRAGFVLDDLWIALQVAELESGCLPGVVGDNGDSFGLMQIHTPSWCQPTKYWPRGYLQTQGMIDDCAELFDPLTNMWVAWHIATHYGWENWSTYANVVG
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