NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10015328

Scaffold Ga0222714_10015328


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10015328 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6238
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015725Metagenome / Metatranscriptome252Y
F020698Metagenome / Metatranscriptome222N
F026547Metagenome / Metatranscriptome197Y
F037207Metagenome / Metatranscriptome168Y
F049007Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100153282F020698N/AMKIPTWMIGIIAIVAVILIWRRTQEGLRPDFTPRCKELLAVPVARIFPDALIPARKNDAIEKFNDLKDKLDEQALMGNKLATECRLIVDNLLKQLREDNMEGFSDALKKLLM
Ga0222714_100153285F049007N/AMPACFPDMQPLVIDHNPFVYVKPKPSYNQFAASHVTPDTKFMCNTYTNRPTQLLARAPGGTAVRSSDPVTKVYLYSIQRP
Ga0222714_100153287F015725N/AMSDNQPRKYRSIATDYFNYFTTRLRRSDAQSDAQLYLNAVPFLLMSMVMVIILHDLFSMFLLRSTKSTCKLMAWGGVGKIVFIRWMLLIPAIFFTVLFTSFFATLAIETCDDGDRFCIIEFLNYKMIFVGIVLGLFVMALFYAWKRRKEGSVEYLLITSLMDPNSDGRSKFLDECKNSEEFKNIMAKQNT
Ga0222714_100153288F026547N/AMIQASIASLAINVLLLELIPFIYVKSFGCPDYLASEDKENMMRGTKWFIRLLALGFSLLVGFFIFGSSDMTKFYVYASLGGAIFVFLTFFGIPAEKFLFFKTDSLEERCKNFKPKFKLSD
Ga0222714_100153289F037207AGGMSRQQIDITGAPGVGVDAEALKAQEERLLGFTKETSDFIKKIQTAFLNPTVLFAMITFIFILTIETLWGSYFKTQDSKEFAKSSSKFIRAMTYFSWISGTILAFGTCMYLAGPFLFGNMFGPKDQQVIGYVTGSLIFVYFINALVTGFGGAPTYTILGNFLAIK
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