Basic Information | |
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Taxon OID | 3300021961 Open in IMG/M |
Scaffold ID | Ga0222714_10016319 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6004 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F018927 | Metagenome | 232 | Y |
F033432 | Metagenome | 177 | Y |
F039133 | Metagenome | 164 | N |
F085699 | Metagenome / Metatranscriptome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0222714_100163193 | F033432 | GAG | MTDYRKKFLSLWSSIMAEERWHKFESQACVPSCKGWNAWAPLCECGKNYCTFKPSGKIEDMQMVIEARPLDF |
Ga0222714_100163195 | F039133 | N/A | MNTTDKVIVKFKSRTPKMLYTAHYNGLLLASGRDPVDLGEFYASKYATEWILQDGKNFYTQRGVNK |
Ga0222714_100163196 | F018927 | N/A | MNKHIQISRHLSVDGVTTYYVIEKNKNSSTIIWHGTSKQAAYQVAYRNARKDNAPLYDTQYVAETDRNGVKHIVPVGNELLEVTE |
Ga0222714_100163198 | F085699 | GGAG | MKPCLNFGHTGAASNVGIKQMQNLKDVTDHVFEFFAQKDITFSLIRKVDGNLIPGGVGCFKFARAGEGIYYSNGLPIVFVTRLSSETGCDANVGKWYRKQWYYENYLRKVNPNCTHLTFIHASEKEGLLSTMIDGVSMVMAQEFNQHSFNTYNPGGNSIFYYDTDKGTDTWYDIQAKLLTAIRCSRMIQMKSKPDLFTI |
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