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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021961 Open in IMG/M |
| Scaffold ID | Ga0222714_10016319 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6004 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018927 | Metagenome | 232 | Y |
| F033432 | Metagenome | 177 | Y |
| F039133 | Metagenome | 164 | N |
| F085699 | Metagenome / Metatranscriptome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222714_100163193 | F033432 | GAG | MTDYRKKFLSLWSSIMAEERWHKFESQACVPSCKGWNAWAPLCECGKNYCTFKPSGKIEDMQMVIEARPLDF |
| Ga0222714_100163195 | F039133 | N/A | MNTTDKVIVKFKSRTPKMLYTAHYNGLLLASGRDPVDLGEFYASKYATEWILQDGKNFYTQRGVNK |
| Ga0222714_100163196 | F018927 | N/A | MNKHIQISRHLSVDGVTTYYVIEKNKNSSTIIWHGTSKQAAYQVAYRNARKDNAPLYDTQYVAETDRNGVKHIVPVGNELLEVTE |
| Ga0222714_100163198 | F085699 | GGAG | MKPCLNFGHTGAASNVGIKQMQNLKDVTDHVFEFFAQKDITFSLIRKVDGNLIPGGVGCFKFARAGEGIYYSNGLPIVFVTRLSSETGCDANVGKWYRKQWYYENYLRKVNPNCTHLTFIHASEKEGLLSTMIDGVSMVMAQEFNQHSFNTYNPGGNSIFYYDTDKGTDTWYDIQAKLLTAIRCSRMIQMKSKPDLFTI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |