NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10034431

Scaffold Ga0222714_10034431


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10034431 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3715
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007169Metagenome / Metatranscriptome356N
F008356Metagenome / Metatranscriptome334Y
F009682Metagenome / Metatranscriptome314Y
F022862Metagenome / Metatranscriptome212N
F024782Metagenome / Metatranscriptome204Y
F102699Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1003443110F009682AGGAGMQKDLYLKSPEERIIIQSDDLKFDGKNIVIPSYYAGIISDYLANTNTEGMNDADKHDFMAFSSFFEAIVDYKQSKYNK
Ga0222714_100344313F007169N/AMSYQLQFDFETPEQKEKRLEEWRKQELEIDKMFETDDDYYKYNKYVDKLLDLLPYRLGWGFKNNWSELRWWIKCKYQTFRYGVSDDDVYSLESRIAEYIVPRLQYFKKKGKFGIPMKLLPSNYIYLEGEEKDKVEKIGEQEIDRILDEMIFAFDYIINPDKYVPFPESSVKWDLKDRNYFNREKTIEEKIAWDDYIKKCEECNARRKKGLQLFVEHMDILWI
Ga0222714_100344314F022862GGAMDMKFTTEQYNFICQTRDEIRALNEKQHILYNNLLKELNISIYAEDWMFDYIYNESGSIDDIEARMR
Ga0222714_100344315F102699GAGMHQPSFYLSLDLPKNFTREDAEKIRKDVLDFLEGKRHYGAKYDGKNGITVKVISVSTNHD
Ga0222714_100344316F024782N/AMIEQAIERLRVFNKWRTGEDDRTMDEAGIKPSQVTEDIKNVCDELEKLISMYASGN
Ga0222714_100344319F008356AGGMANTSSISEFERTKPTETYKKISQLEKLIKEEQIKTENLYSNRIATLDKMLKHTQDLMETFKRGE
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