NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10061554

Scaffold Ga0222714_10061554


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10061554 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2534
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001841Metagenome / Metatranscriptome627Y
F027171Metagenome / Metatranscriptome195N
F088830Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100615542F001841AGGAMGLMTPFSRPNFFLGLLRVAAWVFWRDPVAKSEPPQPKRPRKPILGYNVGDIPYELMAVVRIEWYRKGMAYEVEEYQIEECPDAQAQFQYIVGTALKQGADVSVLTQYEPAALGVEE
Ga0222714_100615543F088830N/AMDHTTQIDNLKLSPWYYAVLAAKAVLQQKITEIEEAGIVSPSFYIARLEELEDLEQFLKMSWDHWMDSLSTRQTVVEESK
Ga0222714_100615544F027171GGAGGVSRVLEIDSLEFDPDGLLRVIAVVDEVVLTHHATQWDPEEYGSALCRGSFYLSDEDLIPATDAELAKLLSDRIDDWAPIDPDE
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