NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10085910

Scaffold Ga0222714_10085910


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10085910 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2035
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031094Metagenome183Y
F038238Metagenome / Metatranscriptome166N
F093854Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100859102F093854N/AMSYIDNSKSNMMKEIFILEQENEMLRNQIRKLKIELNELLDSTKRTETKNEQEREGTIG
Ga0222714_100859104F038238N/AMKLDYQGRQLKLHQRATCLLELLKKAQSEQSRQEGLLAEWRAAGNYDNIRLFTHENNYLIRLAELNDIQKRILQSYYWLIVELYDITENFILPVNRIQ
Ga0222714_100859107F031094N/AVRLTNAHILNQKQISMKTVLIYENNFYPYNAQFIAVAGDNLFLDYEIDGSKFFLVKFRTIDLANNQIILSIVKL
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