NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10093409

Scaffold Ga0222714_10093409


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10093409 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1924
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038240Metagenome / Metatranscriptome166Y
F056612Metagenome / Metatranscriptome137N
F091645Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100934095F091645N/AMAIDFTALFPEEPQPNHGPGMSYCVAPNARMFDYELVTPGECRLRGCLRAVDQKDAKRILLNRHPGATQIIIGKGRRISPPSSKA
Ga0222714_100934096F056612N/AMSDFESAFDAKFTLFDVKEKKSDRAPDKTGSLEIELSEAMKLAEYLTAHPGEDGYGGKTVIKIPVSAWNQRSQSGTDYISGKLWAKKPERSGPPPF
Ga0222714_100934097F038240N/AMATPAGNKMRVQVLLDPEALVMLEREVQLRYNTAHRVTVSSLANEIIKSHYAILDPEHE
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