NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10100976

Scaffold Ga0222714_10100976


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10100976 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1825
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F010618Metagenome301N
F027179Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_101009762F010618N/AMSIQELIKKLQEIEAKYPQYSQDTEVVLAIHNDNEFSEEVEVSYIDEVVHKALDTHSGYICRIVLTGEYNQED
Ga0222714_101009763F002406GGAMCIRLRDELSSEYDDETKDLIIRAFREGLFLKPQLVEELKSSSLIESDYFEDAE
Ga0222714_101009764F027179GAGGMKMIYMADGLFLYKTNNSYIVKDQHDNILKEAKTSQTCSSYISRTLQSRRAAEREAIEKANQDSNQHFTF
Ga0222714_101009765F002398AGGMTNIISTLFFLSISLDPIKNFVSLKTYISENAKVHCHVYFINEEIPDFPRVNIIEKSKVEFFRYLDTIGIEHTQVGSYYFFNKKPK
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