NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10162763

Scaffold Ga0222714_10162763


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10162763 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1325
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008688Metagenome / Metatranscriptome329N
F013524Metagenome / Metatranscriptome270Y
F019476Metagenome / Metatranscriptome229N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_101627632F019476N/AMKFQGFLMSQILTVKVMNDNKTKSARIILDIEWESDDDSDLPSLWDWKRIKAPMNLTKVKYLGIHAQNGPENVSNWMGN
Ga0222714_101627635F013524N/AMKTNKEVVNRLREFTQNNCNTTLDPKLCEDIRYLCDEVERFGVQMLLMNEYGDEDYITIQKYKSKLEKCQSRLDQYEPF
Ga0222714_101627636F008688N/AMLGSIAAILLTAMTVEPPKIKVYLIMSYRGNDLAIEKVYLKKENAQKYCDMYKDSHNYSVEE
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