NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10012573

Scaffold Ga0222713_10012573


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10012573 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7496
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (56.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024558Metagenome / Metatranscriptome205Y
F062765Metagenome / Metatranscriptome130Y
F065787Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1001257314F024558AGGAMIVILYTADFEPIIPIDLPLWLLERLEVEGQVRVAVNRPTQFVDEKIPVGNLEPNIPTVRIRCERLRWRDGSLKTLLVTEDEELALSLNPEWLPGQRAPIQMYMGAMRKMHEELIKQIRKNQS
Ga0222713_1001257318F065787N/AMPLKKLEYYEIRENCKLIDYSLLLAGKGKLWVEVYRDNQYEYRALFPDVSDWSAVPMTILTHKLHETQTDYR
Ga0222713_100125735F062765N/AMGPVTMQWYRTRGLTQVEHHIGDHDCMLYKAGEAFTSETITTHYSCGRIDVHNVPNEPYGDEINVPPMLSTDWALFGNWLETVKTMSVWTLEDLVTAYEQHNPKITWAEYD
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