NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10016731

Scaffold Ga0222713_10016731


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10016731 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6297
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y
F045085Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1001673111F008688N/AMLGSLAAILLTAMTVEPPKIKVYLIMSYRSSDLTIEKVYLKKENAEKYRDMYKESHNYSVEERELTE
Ga0222713_1001673112F013524N/AMKTNKEIVSRLREFTNNNCNTTLDPKLCEDIRYLCDEVERFGREMVRVNDHMDADHITIQRYKKKLEKCQLKLSNYEPF
Ga0222713_1001673113F009135N/AMKIMSDPKYYLKINLPPNFNDLDAEVIKKELMTYINSRNQWGALYGPKSSKKGITIEKVIYRTNED
Ga0222713_100167312F045085AGTAGMRFIDLTVGLIMGSLFAIAILLVLTIFFVVLIPFLFYFTVREVLKQLTKR
Ga0222713_100167314F001840GGAMKDQDSIFLICDCFEHGLLVEKFKDEEEVSLSLFERGLSGRIMNWSERLRWCWQILRYGKPWSDFIILNTDNQKQLKEFLE
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