Basic Information | |
---|---|
Taxon OID | 3300021962 Open in IMG/M |
Scaffold ID | Ga0222713_10019277 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5775 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.06 | Long. (o) | -121.8 | Alt. (m) | Depth (m) | 12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020667 | Metagenome | 222 | Y |
F032960 | Metagenome / Metatranscriptome | 178 | N |
F058812 | Metagenome | 134 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0222713_100192771 | F032960 | N/A | MATTVLSGSPQAATPVYNKMLFKVSGSLIAQSNYRYVCDVKNTAGTTLARLKCDKLPSTNYGFFDVAKVVETLIAPIKPTLTQAGFVDHAGYYSGYRLDFMEEYGNTPVVYTGTVTTVSGRVSFAGNLEQLELATWSGGVYFPSILVDGVSEALTSIANRTVYSNNYGWLAMGQSSGSGVYDSGAAVQYFNSAGVSQRSFQVALPSGVASNTINRFGAGPMNLKSLTSGQCSDNQAGSVSFPTAEGAYYTIAFLDSGGNLTKSYRYTLGPCERFNSIPVHFQNKFGGIDSYTFTLKNRKRANISRQTYGYNSDVYATTTYDKVWAGDFDYVYALNSDWLTDAESAWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL |
Ga0222713_100192772 | F020667 | N/A | MSVTLIAYPLNESNAEVPYVLDTMGEIDIALTYSISDIEDVTKQRGSFSKTIQLPNTTTNRDCFGHAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLISMSKIRGEVTYEVGLFSDDVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGAASSGYVYGVIDAEGFTDILNQGGGWFQAPWWRLGPSIYVKKMVDLIFAEAGFGYSSTFFNSTFFKKLVMPYAAGTMPTNLSGSNIFAASTGSITYLVNDNGTIDFQNDSTGPYYDRSGYWSTANSRFNAPIAPSRWNVEIGFVVSSTVANSLYTYSTSIRNLSSSGDIVNIGPSVNGLTGKRYTIRFDNITAPANAAINIGFRVNSLTTNNFYTIPSGATVQWTCLENPSNIGVLDMRTAIPADVKQSDLLEDLQKMFNLQFMPDPQDPKLIYIEPWVDFYSSGVVDWSQKADENKEQVLTNGDPNAYTNVIFKYKDMGDYLSKTYKQSYPLAREGYGGRMFNTSNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIDGSLASGSVKPLQTGYRLAQYNLIEGQTEWAYQFGVSGNVALSVGILKMPFVSHIDNPYAPTVDLAFGQPRTVFYNAVNASGSFFNYTNNNLYNKYWLNYINETVSSEALQLELTMMINAADVYQLDFRKPIYYGGICWRLLEVRDYLVGQQKPCRVTLRRILNLAEFAPTSTTPISNDPSARYNGPIDPDPTDLNYEPPINPELPTPG |
Ga0222713_100192775 | F058812 | N/A | MNLKNAIESLRTELRKFSTQKQSFADYKLTDGTVVRVDGDLVAGTAVYVVAEDGTLPA |
⦗Top⦘ |