Basic Information | |
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Taxon OID | 3300021962 Open in IMG/M |
Scaffold ID | Ga0222713_10023598 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5103 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.06 | Long. (o) | -121.8 | Alt. (m) | Depth (m) | 12 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000557 | Metagenome / Metatranscriptome | 1026 | N |
F006503 | Metagenome / Metatranscriptome | 371 | N |
F006621 | Metagenome / Metatranscriptome | 368 | Y |
F008996 | Metagenome | 324 | N |
F025272 | Metagenome / Metatranscriptome | 202 | N |
Protein ID | Family | RBS | Sequence |
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Ga0222713_1002359810 | F006503 | GGA | MTNDQFVIAQKHRKYWDQYVASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYQQADLFLEVNQNTITHPLNANPQSKG |
Ga0222713_1002359811 | F025272 | N/A | DILVFPILISALATLAVVEFRVLPGWFYALPFAKRKPFSCMTCFGFWLGVALTLPTCQWYLAPILGLASSATAIIIREWTFK |
Ga0222713_100235982 | F000557 | N/A | MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMPAKSVLKRYMAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLSREGGLFGLFPKKYDGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAEGLT |
Ga0222713_100235984 | F008996 | N/A | MKLLANIAYHHNPERIPNLIRVIEAIKSYPVQADIFVDTNDPEVVGLLADQPVTVHAHTQLSHPWMLTAVHRTRIKETYKYFDWVAYFEDDMMLPKEGFVNFTERFDSMFADGFYPSFTRIETYEDKEGECTPDVNEVLPSSVWCQYNGKDYVSLPFFINYHAFWIFSTKRLKEVLTRNPGELDHIPNNGLYRESLASFPIWSLNLKPMLEFTEQGELADYCKVFHLTNNYKHGSTNIKTLFKR |
Ga0222713_100235989 | F006621 | N/A | MPTPKAKDDNEAQVQARMDSLMMVITTLCDCIGAVDDSNAPNAFAVKMKIVDKIDELIDKIEY |
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