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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021962 Open in IMG/M |
| Scaffold ID | Ga0222713_10044888 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3424 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.06 | Long. (o) | -121.8 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000820 | Metagenome / Metatranscriptome | 878 | Y |
| F012720 | Metagenome / Metatranscriptome | 278 | Y |
| F026010 | Metagenome / Metatranscriptome | 199 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222713_100448882 | F026010 | N/A | LFDHNVTRGALKNLVTDKPSPITVALAQRSDADNLSTLFDHNVTRGALKNLVTDKPSPITVALSQKQSVAQSLVKMEKTAKDDKDIDHILNDHNVTKGHLKNLITDRPAPITKPLDSLAQQPNEKNAT |
| Ga0222713_100448883 | F026010 | GAGG | LVTDKPSPITVALAQRSDADNLSTLFDHNVTRGALKNLVTDKPSPITVALAQRSDADNLSTLFDHNVTRGALKNLVTDKPSPITVALAQRSDADNLSTLFDHNVTRGALKNLVTDKPSPITVALA |
| Ga0222713_100448884 | F000820 | N/A | VTRGALKNLVTDKPSPITVALAQRSDADNLSTLFDHNVTRGALKNLVTDKPSPITVALAQRSDADNLSTLFDHNVTRGALKNLVTDKPSPITVSLAQRSDADNLSTLFDHNVTRGALKNLVTDKPSPITVALAQRSDADNLSTLFDHNVTRGALKNLVTDKPSPITVALA |
| Ga0222713_100448885 | F012720 | N/A | VAVPIDEVRAITLKVSPTYALDHVESVTLKSFRKVVGYDTFNSILKKDRDEKKDPADYYNITVSMMVKRVPELTSAAPAKDPYNGSVGLAATLDKGFPYDDADITLDAAVPNWGMRVQRNTDPLVGKLNGENITKSALVNLVKDTDSPIT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |