Basic Information | |
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Taxon OID | 3300021962 Open in IMG/M |
Scaffold ID | Ga0222713_10064815 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2727 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.06 | Long. (o) | -121.8 | Alt. (m) | Depth (m) | 12 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007525 | Metagenome / Metatranscriptome | 349 | Y |
F008496 | Metagenome / Metatranscriptome | 332 | Y |
F030094 | Metagenome / Metatranscriptome | 186 | Y |
F043404 | Metagenome | 156 | Y |
F082675 | Metagenome / Metatranscriptome | 113 | N |
Protein ID | Family | RBS | Sequence |
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Ga0222713_100648151 | F008496 | N/A | PASVTQMPESNATFVKELVEAGELKPLYDPKATIIVRKGYYYGTPSDSKFDLENADDISRTYWRLDAVQETNNRNSRAQDKLKDYLVENYDEIGEEHATEIANIFSIDLSKEVEVEFNVTIKATVSIPVNEDVSDLSTYDFDITIESNESKYEIQDFDADIDSIDERY |
Ga0222713_1006481510 | F007525 | GGAG | MTKTYEGVTVEYTQTIPTSKQMPEFYVWQEGYESYAQITYLDRVVDVERGGEMSLSLPNLVNGELSDEDVTIVRYSDDLEAAGINDDIQLMQFIKTVSNAGFEIYRMNPWWEVFSHNED |
Ga0222713_100648153 | F043404 | AGGA | MIDTTDPLLSELADHFVELHGVGGIELEQWETAYKFVKHFYHTEEMVQIIIRGKK |
Ga0222713_100648156 | F030094 | GAGG | MNIRGIFEGTFESVWSMYVPDDLYKSYMDSHPDFDEHDRDDIQEMWEHFKSEGCYDEIDDSVDTDVIMTGVEL |
Ga0222713_100648158 | F082675 | AGGAG | MSKQYHWVVVYDEDWGCFMVDAESEQDRDKIMYDKETGRWEYLEEGSAEEAEYYRLEEILAYQMTRLDIPKKTG |
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