NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10068246

Scaffold Ga0222713_10068246


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10068246 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2639
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007169Metagenome / Metatranscriptome356N
F008356Metagenome / Metatranscriptome334Y
F009682Metagenome / Metatranscriptome314Y
F024782Metagenome / Metatranscriptome204Y
F102699Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100682461F007169N/AKYVDKFIDLLPYRLGWGFKNNWYELRWWAKCKYQKFRYGVSDDDVFSLETNIAKFIVPRLQYLKKVGKMGIPMKFLPSNYTSLSEEEQQKAEKIAEKEIDRIMDEIIFAFDYIIDPDKYLPFPQLSIKWDLKDRNYFNREKTIEEKIIWDEYMKKCDQHNERKKQGLLLFVEHMDILWI
Ga0222713_100682464F102699N/AMDNIQAMYQPNYYLTLNLPKGFSREDAEKIQKDVLDFLESKRHYGAKYDGKAGITVNVVSVSTNHD
Ga0222713_100682465F024782AGCAGGMLSAYLQIMIEKAIERLRAFNDWRTGKDERSMTEAGIVPAQVTADIKTVCDELEKLISMYASRN
Ga0222713_100682468F008356AGGMNNTSISEFERTKPTETYKKIVQLEKLIKEEQIKTENLYSNRIATLDKMLKHTRDLMDTFKKGE
Ga0222713_100682469F009682AGGMKKDLYMKNPNEKIVIQSDDLKYDGKNIIIPSYYDSVIFDYLDRVDVKDMNDADYQDYLAFRRFFEDIINYKADKGGN
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Institute for Fundamental Biomedical Research
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