Basic Information | |
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Taxon OID | 3300021962 Open in IMG/M |
Scaffold ID | Ga0222713_10068246 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2639 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.06 | Long. (o) | -121.8 | Alt. (m) | Depth (m) | 12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007169 | Metagenome / Metatranscriptome | 356 | N |
F008356 | Metagenome / Metatranscriptome | 334 | Y |
F009682 | Metagenome / Metatranscriptome | 314 | Y |
F024782 | Metagenome / Metatranscriptome | 204 | Y |
F102699 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222713_100682461 | F007169 | N/A | KYVDKFIDLLPYRLGWGFKNNWYELRWWAKCKYQKFRYGVSDDDVFSLETNIAKFIVPRLQYLKKVGKMGIPMKFLPSNYTSLSEEEQQKAEKIAEKEIDRIMDEIIFAFDYIIDPDKYLPFPQLSIKWDLKDRNYFNREKTIEEKIIWDEYMKKCDQHNERKKQGLLLFVEHMDILWI |
Ga0222713_100682464 | F102699 | N/A | MDNIQAMYQPNYYLTLNLPKGFSREDAEKIQKDVLDFLESKRHYGAKYDGKAGITVNVVSVSTNHD |
Ga0222713_100682465 | F024782 | AGCAGG | MLSAYLQIMIEKAIERLRAFNDWRTGKDERSMTEAGIVPAQVTADIKTVCDELEKLISMYASRN |
Ga0222713_100682468 | F008356 | AGG | MNNTSISEFERTKPTETYKKIVQLEKLIKEEQIKTENLYSNRIATLDKMLKHTRDLMDTFKKGE |
Ga0222713_100682469 | F009682 | AGG | MKKDLYMKNPNEKIVIQSDDLKYDGKNIIIPSYYDSVIFDYLDRVDVKDMNDADYQDYLAFRRFFEDIINYKADKGGN |
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