NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10298569

Scaffold Ga0222713_10298569


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10298569 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1027
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F009266Metagenome / Metatranscriptome320Y
F060914Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_102985691F009266AGGAMTPKEIKILDKEIQYLCEQQDRVKAIREYTNINPGYNFLKEVETIESLYKSVLEHRKHDKSMYFSCATSGWYVVYLRDKKTYKKGEKFRIKI
Ga0222713_102985692F002398GGAMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNVIEKSKFDFFAYLDTIGVEHSKVGSYYFFNRKQK
Ga0222713_102985693F060914GAGLKRLIKVRSDISASIYPIELYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNAKIIQDISELKAQGIL
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