NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10001556

Scaffold Ga0222712_10001556


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10001556 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27929
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (77.27%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001424Metagenome / Metatranscriptome698Y
F003662Metagenome / Metatranscriptome474Y
F006063Metagenome / Metatranscriptome382Y
F007360Metagenome / Metatranscriptome352N
F011843Metagenome286Y
F035676Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000155610F035676AGGMSREKMKSNFVNNHLRLNGNVHGHKLRLCNKCEEMRPPEGGVQMSAARWICASCWTNRETGRNLKRARESND
Ga0222712_1000155611F006063GAGGMTDLLTALHLSVLLLDLKIRMMEAIDEGMFDLAMTYHLLILVRTDELAAHKWAMSPSAWKIYETIHP
Ga0222712_100015563F001424AGGAGMVQQVEQLSTSYPQEWDDRVFCHECKHCSAVPQRKSMPAELMEKIRKVNAKPLQWMLKEAKIKNGWATVTWTEHQCSQTGFAVFPTDVKHRCHMYQAKPSAVESEEWWLT
Ga0222712_1000155643F007360AGCAGGVLAPALVLAHCFLLASNMPNTPTPEPQRYADAQLMALLDPSSKRDTILITPGSPMPSRIPDGLTVARTSRGIVITSEPSKVKIIDQGSERDVGMALFGYAHDQAKGFDNVAVAMDRSGTPVAELAIKPGQERRAMMAASLLAPSTGSTNMMSRGDVVKSRLKGLLE
Ga0222712_100015567F003662N/AMKTQQATVVLDDQEWIVLDTDEVKDKKVFCTLMSPDGHITWHTWVDINQIMGVI
Ga0222712_100015568F011843GGGGGMKTQMLIKVRQLFNVDYVPKSTNRHNQKQYIKAIRLLGDKWLIHKDNKVQRLQ
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