NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10004031

Scaffold Ga0222712_10004031


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10004031 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15615
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (76.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001713Metagenome648Y
F002487Metagenome / Metatranscriptome554Y
F007203Metagenome / Metatranscriptome356Y
F014143Metagenome / Metatranscriptome265Y
F087188Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000403114F002487N/AMITREAAIKDLSHTTYCCYCLETKGDRWSCCSENHFMEFTDLYKEDQEMLIEEYLKEE
Ga0222712_1000403115F014143GAGGMNTRFLIHVRKIFATYDAPPEVIRSYQKQWVRSVRQLGDKWLVAKSIERIQ
Ga0222712_1000403127F087188AGGAMSHKFNAECYFQPEQYNPRIRATVPPAWVIEFDCALPNTNVPPVFYGHSRREAIQNAIDCLKSRGFTGRLILN
Ga0222712_1000403128F001713AGGAMKYEFDTTVGEGSVIVTVVMEYERDEEGIYNENIEDVIYEKVSLMGIFTSEQFKEMEIEGSMRLQKHLLDEKEHSDTVDYDLRGV
Ga0222712_1000403137F007203GGAMYLERQGVNLAPRVKELENRIEVLENVVKALQLEKPRMGRPPKDKNATERTEINTSGRD
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