NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10007147

Scaffold Ga0222712_10007147


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10007147 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10879
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005053Metagenome / Metatranscriptome413Y
F071173Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100071471F071173GGAGMITKFGKRFLTSYLSGNNSFSSKEIALGIGSTAANQYGNDTRLNFEFYRLPVELSSFSVLENGVDGSGSPAYDYFVTYKATIPQDISGVISEVGLYPGKRQSLNNFDSKFITSFTNEFNWFDGSTNPTSQSNTQDSNGAYTFLSKVSDSMVRVDVASGQTKEYINSLISDDISGYSINDTIAIAYKKADNNVSKIRVKFYSSELAYYYVDFTPESGTGDKIQELSLNNLFSNYTASPNLPDPSSIIKIGVATTATGGATTVYFDAIRINDEDTFDPGYGLI
Ga0222712_100071474F005053AGAAGGMTTYLPRGSVLSIEAKDLLATPEGTTKIWNKITEHNRSDISISIERIERSVRTSNGTLRKNHIADKRRFSMSWTMLPSYRSLTVDGGWGAEDLRSFYLSDDGKKEFNVRINLAKGGADTSSSGATYTPTMAKTSSELYTVVFGGCNFSVVKRGLQPHWNVSIELEEV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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