NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10010846

Scaffold Ga0222712_10010846


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10010846 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8259
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003661Metagenome / Metatranscriptome474Y
F011666Metagenome288Y
F091645Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1001084610F011666N/AMEWHPIERTQESQFSEIATAKMLEEWLKQGDIKGIYNAALLLNTMLHQQRTITKWLAGEAARNLGRPDLEDDILQKSIIQSG
Ga0222712_1001084615F091645N/AMNKIANFAELFPEYVEPNRGPGISYCVAPNARMFDYELVMPGERRLRGCLRAINKKDAERILQNRHPGATKIDIGEGRKIISAPAKT
Ga0222712_100108464F003661AGCAGMDPTTAAAIAIVIAAGSEIIALLPVKENSWVQLIVKALKIIFPKR
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