NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10016365

Scaffold Ga0222712_10016365


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10016365 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6367
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F000868Metagenome / Metatranscriptome853Y
F007921Metagenome / Metatranscriptome342Y
F020166Metagenome / Metatranscriptome225Y
F038246Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1001636510F038246AGGAMGILDNLEAYLETAEETEKCHYCQALATYNDLAEVDRNYQIVGVCACHAYDGLVS
Ga0222712_1001636513F000852AGGAMTTKREYLKQQGITVGVRGRFSGAAKVALQEAVQKGIVFTAEPNNKAK
Ga0222712_1001636514F000441GAGGMRMSDNYINDQLSTAQKLLWGGSETENIEAHNIIAKLIKDRIEQTD
Ga0222712_1001636519F000868GAGGMSDPHGTIGNYRKGGSMSFLENENQMVIDATYSEIGDMLVEDWVNSNLDEGQMFADFRFAEMADSNYLKDRFNLFYDLKPGDQYYLEYEEE
Ga0222712_100163652F020166N/AMKEPKIMKMDWRPLGYWPVYKDGKLTWEKDPDELK
Ga0222712_100163655F007921AGGMIEWLVNRIFRWDSLRHAIFDEVRIYQSIDRSMWEYEKEGPTNLTWSEGDRWYGWTFNPVNKRYYFDDIGNESLIGLWEDQWLREAEVNGSM
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