NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10027663

Scaffold Ga0222712_10027663


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10027663 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4551
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057368Metagenome / Metatranscriptome136N
F067743Metagenome / Metatranscriptome125N
F085616Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100276634F067743N/AMTLTAVPIEIAAELSQKALDYITELVEGTYALDDILQFITEYNSDDFINYYVDYVEQGDKVGFDVVDAFLEVNNISDVAMVEEVYIGEYESEADFAENYYNDIMDVPDALVIDWKETFYQSLSYDYDYVKGHMKGYVFRHDF
Ga0222712_100276635F085616N/AMSFTKTQEQKQERWARIAELEVSKRVMTSAQSISARNKQKKATILADKAENLLNSLTQSVRVSKAPMGTNPLTVEDKAPVPDANTFLPNRKKIDQLAVTANQIIDDILKG
Ga0222712_100276636F057368N/AMTKQTCIDELIETFMNRLEYLIDIDDYASADAIHSEFVVNGVEPEHGEYIWLFVPNLSLY
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