NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10028321

Scaffold Ga0222712_10028321


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10028321 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4483
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038245Metagenome / Metatranscriptome166Y
F045760Metagenome / Metatranscriptome152N
F070116Metagenome / Metatranscriptome123N
F078719Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100283213F038245AGGAMKIYFGDANEDIFSDGLFTCNSSQFYYGVEHGTGPGGMDEVRIFDGCTRYVPVHMEAVPELIAALQEIQRIGEAVKRAAEMTERAESDVQGYVTKAWHDEYEVDFDTVE
Ga0222712_100283214F045760GGAGMASVSKSKQAYSALYKSSTRWATNRKIKLTRLLKQQPNNEQIKDALGNIKYRRHTPNSKTVWSHSNIRLAKLFKEFTGRASADLFSSNPKVQSAALAYRPDADKLKVIEGKVSFSLGARAHDSKGNLVWK
Ga0222712_100283215F078719AGGMEVIELYLLFALTTGITSCVLFLAPAIAIAKDMGIENSFTENTWLSYLVYITITTVTAPFAVLPIFIPSFSERFKTGIEKSVMESQT
Ga0222712_100283217F070116N/AMSKFRTWDSEILADAVKISLQIRAKIEEMCINHRISPDSLPNSLIPTDNLYSLVCAYEAAYNALIENDLVKSGNLTTQKNIH
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