NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10113636

Scaffold Ga0222712_10113636


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10113636 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1874
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038245Metagenome / Metatranscriptome166Y
F045760Metagenome / Metatranscriptome152N
F070116Metagenome / Metatranscriptome123N
F078719Metagenome / Metatranscriptome116Y
F099303Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_101136362F070116GGAMSKFNTWDSTVLADAVKISIQIRTKIEEMCITTRTPPDDLPNSLIPTSNLYNLVCAYEAAYNALIEKDLVKSGNPQTNKQIH
Ga0222712_101136363F099303N/AMKFLEFTYTKTDGSQSKRAVIELVTPTQFVEGIDVSELDQDSFADFCREFAALKADQHNQTMEKLAQFDLRHNYRRFIPEQMSDVTHDYV
Ga0222712_101136364F078719AGGMEVIELYLLFALTTGISSCVIFLAPAIAEAKFIGIENSFTENTWLSYFTYTTITSLFAPFTVLPIFIPSFAERFKAGIGRAVFESQT
Ga0222712_101136365F045760AGGAMASVSKSKQAYAALYKSSTRWATNRKIKLTRVLKQQPNNEQVKDALANIKYRRHTPNGKTVWSHGNIRLAKLFKEFTGRASADLFSSNPKVQAAALSYRPDESKLKVIEGKVNFSLGARAHDSKGNLVWK
Ga0222712_101136366F038245AGGAMKIYFGNANEDLFADGLFTLGDNQYYYGVEHGTNPGGMDEVAIFDGCNRFLPVHMEAIPELIAALQEVQTIQEAVKRAKEMTERAESNVEGYVTEAWHGEFEVDFDRTGL
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