NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10177101

Scaffold Ga0222712_10177101


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10177101 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1416
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003212Metagenome / Metatranscriptome500Y
F023834Metagenome208Y
F026864Metagenome196Y
F073256Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_101771011F073256GGAGMKLQEIDTIQDLKEWVEENMPGARLTEDSMGTIVIHTGLVSTMGGYLHEKEEVA
Ga0222712_101771014F026864AGGAGMSEQEKTAQFVFTVVIAPANKQYDVELWDFAGDEPKQLSTGQATNWRTALGEALSKIDLPTEKVEKTINDLVKEGVENEG
Ga0222712_101771015F003212AGGMKDKWLVTIEIETYDGDPKRWDWDYIFTGDDVVKVISSDFKGRVLKEDSNV
Ga0222712_101771016F023834AGGAGGMSEPTVEYWRAKADLCRDLALAQIIDGDEKMEKEAGMNLMRMVHALSMVDTFNEGGEDE
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