NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10000970

Scaffold Ga0222719_10000970


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10000970 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28571
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (82.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022392Metagenome / Metatranscriptome214N
F053902Metagenome / Metatranscriptome140N
F078418Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0222719_1000097028F022392N/AMTNNNTTKEATMKSYDITYIDPWTNREVRHLDVPQCQLKDIDGETWFTGYNKPIEVITATLVSIERDEAKHAYFNTYGTASE
Ga0222719_1000097029F078418GGAGMNTEQLETINQTTYRQIINTLYTLRCKLSEAQQAPDEYAQCYVNELQQAIINLDAVKKYF
Ga0222719_1000097031F053902GGAGMRDNRWKVKMVRRLTDKVSPDVICESTFTYELPADYGDMLNGIDEVDEVYQDSIFNGIQRHLIKKFGDSLFFGLELIEPSKS
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