NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222719_10001025

Scaffold Ga0222719_10001025


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10001025 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27801
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (87.72%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F029779Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_1000102511F008925AGGAGMTTKTKPTIDTVTLNLVNALKQMDDKLNEGSWEYINLGDVLRFQDVYNETIKHYDLKKEGGIHDYGADKGKYQQFYYSDYVCHTNPNAYDPSKVEEEEDE
Ga0222719_1000102512F029779AGGAGMSDTEKYEELCRALVGIDATERYTHEDILSYVYNLKKTEEKFYDNKN
Ga0222719_1000102513F012581AGGAGMAKYTLYAKKVYYYRKEITAQDSKSAEKRGADYEADDNAERLFEPSGEEFYITSIEESDD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.