NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10006272

Scaffold Ga0222719_10006272


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10006272 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10153
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009459Metagenome317Y
F044460Metagenome / Metatranscriptome154N
F085539Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0222719_1000627210F085539N/AMNNTITKKDLDGAIDAINKLVPQKTFSLFKTPQVWYVATDKGERRVMSGKTKQSLYDQLWAFIEGLRILKTFN
Ga0222719_100062722F044460N/AMDETDEHEVLEQLDESISALVTKGYDFFWSNNELCYDSELKVVRSDRPRVRPPTWFCFMNEDERERLTK
Ga0222719_100062725F009459N/AMIEELMWWIHQNEMGGDCIDPSNRFFPLYLELQKLKDKLDNDKHDLYVSVSADETK
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Institute for Fundamental Biomedical Research
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