NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10007662

Scaffold Ga0222719_10007662


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10007662 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9091
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003169Metagenome / Metatranscriptome504Y
F018079Metagenome / Metatranscriptome237N
F018084Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_1000766210F003169GAGMVGVAKKKEKNLTMVGIAFSEHGGKTGRAMIKYPLYKKNNSRKNTLVYPGLTTVSFDRIITYMQYYYVMCQKGSLLHRCYVQLDPESADILHDSLEQRYDLVQVCAVPRSSVEPDIVIPPAP
Ga0222719_1000766212F018084N/AMKIALYVLALLIMPGIIMGIVSSYRAGQRPHRLLYRQLQKFTHRKK
Ga0222719_1000766219F018079N/AMEKRKMIYIISRKPTWFHTHCLTPTPGTPLWFDPTWVVGDCELCRMDIDNQDWWNNCSYNQSQRKFYDVIEKELKVWI
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