NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10025618

Scaffold Ga0222719_10025618


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10025618 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4674
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064687Metagenome128N
F080643Metagenome115N
F093793Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0222719_1002561810F093793AGGMTKKQITEYLILFVLGLIITIGFVNPISKKYTWWNAIHITKDLYR
Ga0222719_100256184F064687GAGMPKNNINLIRKYAKSCKTKERFKKVVLSLKVLGNSNDHMSDVTLDGYWSYYNELSSAEQRMRDVTRFVHGYVSKHIQDKLFS
Ga0222719_100256189F080643AGGMTKQTIDITPSWKSASEILIMALQNPKLSKQGFDEGMAQIREMASKLDIACKELNKLAKE
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Institute for Fundamental Biomedical Research
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