NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10357454

Scaffold Ga0222719_10357454


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10357454 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)924
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014001Metagenome / Metatranscriptome266Y
F040073Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_103574541F014001N/AMSTQTQLELNQAQAAIYTRSNIRRAFQDFDDTEVSGIYLRGDDCLVVRRDGSEQTYNRELIKVAYSNYTHRLKDFFSYLGPNYRGPSVWHNNAYIMFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDPGKVTALLQSDQTDLGHLVA
Ga0222719_103574543F040073GAGMKHSKLMLQFEMSPEDSFWQEKMMRSINECNSMSELKEMAILLTKIATQRQVAIKGLVRDAMDLVGKQM

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