Scaffold Ga0232643_1171684

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0232643_1171684

Scaffold Ga0232643_1171684

Overview

Basic Information
Taxon OID	3300021975 Open in IMG/M
Scaffold ID	Ga0232643_1171684 Open in IMG/M
Source Dataset Name	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS927 _150kmer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	676
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location Name	Hafa Adai vent field, Mariana back arc basin
Coordinates	Lat. (^o)	16.96175748	Long. (^o)	144.8691905	Alt. (m)		Depth (m)	3278
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036742	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0232643_11716841	F036742	AGGAG	MPLWSSSLSPDSMEYEFDVTAGVGALEFTIHDNILLDSTDGAPKTNAGFRLLLEEQIEKKPTWLTADEKSNCFANNEGWWLRHTKNSAGTQYWDECLVALGGLAGTDATTGLGVSQITHVSFEGLTTGAANNNPAYSVASGGTLATAFVRIAWN

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