NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232639_1044470

Scaffold Ga0232639_1044470


Overview

Basic Information
Taxon OID3300021977 Open in IMG/M
Scaffold IDGa0232639_1044470 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS925 _150kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1666
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameHafa Adai vent field, Mariana back arc basin
CoordinatesLat. (o)16.96173128Long. (o)144.86920936Alt. (m)Depth (m)3278
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010949Metagenome / Metatranscriptome297Y
F052875Metagenome142N
F092722Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0232639_10444702F092722AGGGGGMYFVVGDIRFPITFPANWTNIGVSTNEAVSQPVQIPTKVVGYKTTK
Ga0232639_10444703F052875GAGGVELAAVQQLVAAVGPIGAMVVIGAWWFVSHQEKRNGAKDQTARLKARDAIIQISADVGHMKKDIADIKADGKTTATTLMQHMAQQHPRGR
Ga0232639_10444706F010949N/ATLRIKDTDLGRTGITRALDISPLTSAVTGATAYLWVGNLTITNSSFPTLNMETSDVANLTTGLLCDGHTLAATISNTVSDVVLESERLSSVYEVNGSIVDKIQIHITGTSGAFIENLILDNVDAWAGAAHFSRMKIGTATMNNSNKIGDGSGVDSASCVINSSVNVRNLTNTIQDRPIKV
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